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Dx Dialogues: Metastatic Breast Cancer

Comprehensive biomarker testing: A critical step in advanced breast cancer

Identifying actionable pathway alterations guides precision treatment decisions

Comprehensive biomarker testing: A critical step in advanced breast cancer||Treatment sequencing in HR+/HER2- advanced breast cancer: Key considerations|Expanding horizons: Novel approaches beyond traditional pathway inhibition

Written by Dr. Stephanie Neary, PhD, MPA, MMS, PA-C – Medical educator and health professions education scholar. Medically reviewed in February 2026.

The evolving landscape of HR+/HER2- advanced breast cancer demands a strategic approach to biomarker testing, particularly as patients progress on endocrine therapy.1 Comprehensive genomic profiling has emerged as an essential tool for identifying actionable alterations, including PIK3CA, PTEN, and AKT1 mutations.1,2 The timing of genomic profiling may vary based on individual clinical scenarios, treatment history, and the availability of actionable therapeutic options.

Two primary testing modalities are available, each offering distinct advantages. Tissue-based next-generation sequencing provides comprehensive genomic analysis from tumor samples, while liquid biopsy through circulating tumor DNA (ctDNA) offers a minimally invasive alternative.3 Emerging evidence suggests that plasma-based ctDNA analysis may reveal a broader mutational spectrum than tissue sampling alone, potentially capturing genomic heterogeneity across metastatic sites.3 Liquid biopsy presents several practical advantages, including the ability to monitor disease evolution without requiring tissue procurement, the potential to detect alterations that tissue sampling might miss due to tumor heterogeneity, and the capacity to identify resistance-associated mutations, such as ESR1 alterations, that may emerge during treatment.3 Additionally, ctDNA analysis can provide assessments of genomic instability markers, offering insights into therapy resistance risk and informing treatment selection in real-time.3

Clinical evidence has demonstrated the importance of biomarker-guided patient selection for therapeutic interventions. In one recent trial, patients with confirmed PIK3CA, AKT1, or PTEN alterations experienced clinically meaningful improvements in progression-free survival when treated with pathway-targeted therapy plus fulvestrant, while the benefit in biomarker-negative populations remained uncertain.4 This underscores the role of comprehensive genomic testing in identifying patients most likely to benefit from these targeted approaches.

However, treatment selection following biomarker identification requires careful consideration of the specific alteration detected, prior therapy exposure, patient comorbidities, and individual tolerance for potential adverse events.5 As treatment approaches becomes increasingly personalized, early and comprehensive biomarker testing enables proactive treatment planning and ensures patients have access to the full spectrum of available therapeutic options tailored to their tumor’s molecular characteristics.

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[1] Cejalvo Andújar JM, Ayala de la Peña F, Margeli Vila M, Pascual J, Tolosa P, Pages C, Cuenca M, Guerrero Zotano Á. Optimizing therapeutic approaches for HR+/HER2- advanced breast cancer: clinical perspectives on biomarkers and treatment strategies post-CDK4/6 inhibitor progression. Cancer Drug Resist. 2025 Jan 22;8:5. doi: 10.20517/cdr.2024.169. PMID: 39935426; PMCID: PMC11810462.

[2] Bhave MA, Quintanilha JCF, Tukachinsky H, Li G, Scott T, Ross JS, Pasquina L, Huang RSP, McArthur H, Levy MA, Graf RP, Kalinsky K. Comprehensive genomic profiling of ESR1, PIK3CA, AKT1, and PTEN in HR(+)HER2(-) metastatic breast cancer: prevalence along treatment course and predictive value for endocrine therapy resistance in real-world practice. Breast Cancer Res Treat. 2024 Oct;207(3):599-609. doi: 10.1007/s10549-024-07376-w. Epub 2024 Jun 14. Erratum in: Breast Cancer Res Treat. 2024 Oct;207(3):611-614. doi: 10.1007/s10549-024-07427-2. PMID: 38872062; PMCID: PMC11420341.

[3] Bharde A, Nadagouda S, Dongare M, Hariramani K, Basavalingegowda M, Haldar S, D’Souza A, Jadhav B, Prajapati S, Jadhav V, Joshi S, Vasudevan A, Uttarwar M, Zhou W, Kishore S, Prabhash K, Khandare J, Shafi G. ctDNA-based liquid biopsy reveals wider mutational profile with therapy resistance and metastasis susceptibility signatures in early-stage breast cancer patients. J Liq Biopsy. 2024 Dec 27;7:100284. doi: 10.1016/j.jlb.2024.100284. PMID: 40027235; PMCID: PMC11863978.

[4] Dilawari A, Buturla J, Osgood C, Gao X, Chen W, Ricks TK, Schaefer T, Avasarala S, Reyes Turcu F, Pathak A, Kalavar S, Bhatnagar V, Collazo J, Rahman NA, Mixter B, Tang S, Pazdur R, Kluetz P, Amiri-Kordestani L. US Food and Drug Administration Approval Summary: Capivasertib With Fulvestrant for Hormone Receptor-Positive, Human Epidermal Growth Factor Receptor 2-Negative Locally Advanced or Metastatic Breast Cancer With PIK3CA/AKT1/PTEN J Clin Oncol. 2024 Dec;42(34):4103-4113. doi: 10.1200/JCO.24.00427. Epub 2024 Aug 19. PMID: 39159418; PMCID: PMC11588547.

[5] Narvaez DP, Cescon DW. Navigating Treatment Sequencing in Advanced HR+/HER2- Breast Cancer After CDK4/6 Inhibitors: Biomarker-Driven Strategies and Emerging Therapies. Int J Mol Sci. 2025 Oct 24;26(21):10366. doi: 10.3390/ijms262110366. PMID: 41226406; PMCID: PMC12609478.

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